PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G15810.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 294aa    MW: 32366.7 Da    PI: 8.9059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G15810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.62.9e-50111501128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.........leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                   +ppGfrFhP+d+elv +yL +k+++ +              v i +vd++k+ePwdLp+++  + kewyfFs rd+kyatg+r+nrat+sgyWkatg
  OB08G15810.1  11 MPPGFRFHPRDDELVLDYLLHKLAAGRggggggggvYGG-GVaIVDVDLNKCEPWDLPEAACVGGKEWYFFSLRDRKYATGQRTNRATRSGYWKATG 106
                   79********************99999777776664222.344***************7666789******************************** PP

           NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   kd++++++   ++ +vg++ktLvfy grapkg+kt+Wvmhe+rl
  OB08G15810.1 107 KDRSITRRggsGDPAVGMRKTLVFYCGRAPKGRKTEWVMHEFRL 150
                   *******96555556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-575173IPR003441NAC domain
PROSITE profilePS5100553.93111173IPR003441NAC domain
PfamPF023652.6E-2612150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSFIGTVEAR MPPGFRFHPR DDELVLDYLL HKLAAGRGGG GGGGGVYGGG VAIVDVDLNK  60
CEPWDLPEAA CVGGKEWYFF SLRDRKYATG QRTNRATRSG YWKATGKDRS ITRRGGSGDP  120
AVGMRKTLVF YCGRAPKGRK TEWVMHEFRL DPQPLHLKKN IQEDWVLCRV FYKTRQTIPS  180
PSSEEPGRSN ELDLPSAPSL PPIIDAYIAF DTTPTKTTTT GSYEQVSCFS GLPALPLKGS  240
ISFGDLLAMD TSEKKAIRAL HNSSNTAKME FSPDWGQEST GLSQMWNPAP LNNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4551769171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G15810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201971e-138AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659208.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE66e-78NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLJ3MR520.0J3MR52_ORYBR; Uncharacterized protein
STRINGOB08G15810.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-78NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]