PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G17020.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 215aa MW: 23656.5 Da PI: 9.4242

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G17020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.1	4e-15	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNr+ + k+ OB08G17020.1 33 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRKSRSKN 93 89***************99***********************************995 PP
2	Wus_type_Homeobox	105.3	4e-34	32	94	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNrk+R+++k OB08G17020.1 32 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRKSRSKNK 94 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-7	15	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.46E-11	28	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.608	29	94	IPR001356	Homeobox domain
SMART	SM00389	1.3E-4	31	98	IPR001356	Homeobox domain
CDD	cd00086	1.88E-4	33	94	No hit	No description
Pfam	PF00046	7.5E-13	33	92	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDHHHHLHLH DGAVQASHGG HRGGGGEGGE PARSRWAPKP EQILILESIF NSGMVNPAKD 60 ETARIRRLLE RFGAVRDANV FYWFQNRKSR SKNKLRGQAA RXXXXXXXXX XXXXXXXXGG 120 GGGYYHHHDV LGHHHSPPFL MHGGCVVTSA TAAPVPPAGG PPXXXXXXXX XXXXXXXXXX 180 XXXXRGAGAG DDHHYSSYAD NDSTQLSYHQ PTTGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G17020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	5e-87	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	5e-87	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	5e-87	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBank	EU954172	5e-87	EU954172.1 Zea mays clone 1457989 WUSCHEL-related homeobox 11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q6Z3L4	3e-50	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	J3MRH3	1e-118	J3MRH3_ORYBR; Uncharacterized protein
STRING	OB08G17020.1	1e-119	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	3e-30	WUSCHEL related homeobox 11

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]