PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G18480.1
Common NameLOC102714208
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 201aa    MW: 22960.6 Da    PI: 6.7985
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G18480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.3e-081431762154
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  OB08G18480.1 143 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 176
                   569*****************************87 PP
2ELK27.66.4e-1097118122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELKh+L+++Y+++L+++++E++
  OB08G18480.1  97 ELKHELKQGYKEKLIDIREEIL 118
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012565.9E-14142IPR005541KNOX2
PfamPF037919.0E-13141IPR005541KNOX2
SMARTSM011880.00497118IPR005539ELK domain
PfamPF037891.2E-497118IPR005539ELK domain
PROSITE profilePS5121310.03997117IPR005539ELK domain
PROSITE profilePS5007111.742117180IPR001356Homeobox domain
SuperFamilySSF466892.22E-16119184IPR009057Homeodomain-like
SMARTSM003899.7E-11119184IPR001356Homeobox domain
CDDcd000861.33E-11120181No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25124181IPR009057Homeodomain-like
PfamPF059204.3E-18137176IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQNLQSL TGASPGEGTG ATMSDGEDDQ  60
ADSEANMYDP SLDGADNMGF GLPTESERSL MERVRQELKH ELKQGYKEKL IDIREEILRK  120
RRAGKLPGDT TSTLKAWWQS HAKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS  180
NPSTSSNVKT KRKSNAGDNN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13120184872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G18480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345860.0CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696167.11e-151PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N41e-150KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0ATH41e-148A0A0E0ATH4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0LTE41e-148A0A0E0LTE4_ORYPU; Uncharacterized protein
TrEMBLJ3MRW91e-149J3MRW9_ORYBR; Uncharacterized protein
STRINGOB08G18480.11e-150(Oryza brachyantha)
STRINGOPUNC08G08730.11e-149(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-127KNOTTED1-like homeobox gene 3