PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G20220.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 207aa    MW: 23047.2 Da    PI: 7.2714
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G20220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.74.1e-1615452555
       G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   +AtPkti+++m+vkgLtl h+kSHLQkYRl
  OB08G20220.1 15 AEATPKTIMRTMGVKGLTLFHLKSHLQKYRL 45
                  57****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-6847IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-101546IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-141546IPR009057Homeodomain-like
PfamPF143792.5E-2185130IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSFTHYYADY NINPAEATPK TIMRTMGVKG LTLFHLKSHL QKYRLGKQSG KEMVEQSKDA  60
YILGAQSGAN LSPRVPTPDV KESQEVKEAL RAQMEVQRKL HEQVEVQRHV QIRMDAYQNY  120
IDTLLEKACN IVSEQLNGFT ISDHDLPDLS SAGVMLSSAD PLSPSIFHQL SVSSINLHSP  180
GGKSSPFAVP GDADLFFQKV PEKRNSC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G20220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038730.0AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBankCT8342320.0CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659337.21e-138PREDICTED: myb family transcription factor APL-like
SwissprotQ94A572e-43PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLJ3MSE31e-153J3MSE3_ORYBR; Uncharacterized protein
STRINGOB08G20220.11e-154(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.18e-46G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]