PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G20230.1
Common NameLOC102709949
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 308aa    MW: 33563.2 Da    PI: 6.5901
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G20230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.8e-334599155
       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  OB08G20230.1 45 RQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 99
                  58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.75742102IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-3244100IPR009057Homeodomain-like
SuperFamilySSF466893.58E-184499IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-2646100IPR006447Myb domain, plants
PfamPF002498.1E-94798IPR001005SANT/Myb domain
PfamPF143791.5E-23131177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYQPNPISSS GHTHGNPSTH EQMELGGNAM VPSNGGNNNA NMAARQRLRW TNELHDRFVE  60
AVTQLGGPDR ATPKGVLRIM GVPGLTIYHV KSHLQKYRLA KYIPDPSADD NKAEDKDSGN  120
LLAALEGSSG MQISEALKLQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQK IIEEQQRVIG  180
AGSPRDTSSE QLPESERTNP PTPVPTSESP VQGAPRKKLN GSQVEPTKSP SHDDPPPHGE  240
PLTPDSSCRP GSPTLSPKHE RASKRQRGSD DAGDGSAFAD GEFVLPHSIF ESSTGSEFQQ  300
CSMPYSGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G20230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043961e-123AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10.
GenBankAP0044591e-123AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11.
GenBankAP0149641e-123AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659336.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_015695721.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ9SJW01e-95PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLJ3MSE40.0J3MSE4_ORYBR; Uncharacterized protein
STRINGOB08G20230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-69G2-like family protein