PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G21050.1
Common NameLOC102702875
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 246aa    MW: 27136.4 Da    PI: 9.7846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G21050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.2e-1729116184
                   EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
            B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                   f+k l+psd+  s  +l +p ++a +     +++ + +t+ +ed    g++W +++  +++++ + ltkGW+ Fv+++gLk+gD+v F +
  OB08G21050.1  29 FEKLLMPSDMCGStEWLGIPEEHAWKLgrmVQDQDGYFTVFVEDgvVPGKQWHFRY--WGNKKIHGLTKGWRCFVSEKGLKAGDTVSFFR 116
                   89******9966659************9884444578899999966678*******..*****************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-1825128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-1627129IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-1728129No hitNo description
SMARTSM010191.2E-529129IPR003340B3 DNA binding domain
PfamPF023623.4E-1329124IPR003340B3 DNA binding domain
PROSITE profilePS5086310.20730131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAASAPLSAT TVGVEDVADI EVLEMEYLFE KLLMPSDMCG STEWLGIPEE HAWKLGRMVQ  60
DQDGYFTVFV EDGVVPGKQW HFRYWGNKKI HGLTKGWRCF VSEKGLKAGD TVSFFRGAVC  120
SRLFICYRSG ARANLCSFAT SPHGLSAPLG QARPRAVNEV GGRGQRRQTS SGRSGALPLP  180
LPVSSRRRHR TSVVRPIPEP MTEMPPILES MFLVATPPAV KTIRLFGVDI KVPLPSIVQP  240
KRESNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-122613511122DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G21050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660090.10.0PREDICTED: B3 domain-containing protein Os02g0455800-like
SwissprotQ6K3B22e-92Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLJ3MSM50.0J3MSM5_ORYBR; Uncharacterized protein
STRINGOB08G21050.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.15e-17B3 family protein