PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23110.1
Common NameLOC102713840
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25616.1 Da    PI: 9.0852
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  kri+n + rqvtfskRr g++KKA EL +LCdaev +++fs tg+ly+++s
  OB08G23110.1  9 KRIDNATSRQVTFSKRRSGLFKKARELAILCDAEVGLVVFSGTGRLYDFAS 59
                  79***********************************************86 PP
2K-box782.3e-2681170998
         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +++++a+ +q+e++ L+++++nLq+ +R+llG++L+ L++++Lq+Le++Le sl++iR +K++ +++qi+el +k   +++en++L+kk+
  OB08G23110.1  81 NASSEAKLWQREATCLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLRNIRVRKDNAMMDQIQELSRKGSLIHQENMELHKKI 170
                   6788999*********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.156161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.70E-44275No hitNo description
SuperFamilySSF554554.45E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.51286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KARELAILCD AEVGLVVFSG TGRLYDFAST  60
SMKSIIERYN ETKEDPHLTM NASSEAKLWQ REATCLRQQL HNLQEYHRQL LGQQLSGLDV  120
EDLQNLESKL EMSLRNIRVR KDNAMMDQIQ ELSRKGSLIH QENMELHKKI SLLHKENINL  180
QNKVYGPQGN GHPTGSTIQH SFLTTKNEIG ANLELSLTEN VEKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-22177176MEF2C
5f28_B9e-22177176MEF2C
5f28_C9e-22177176MEF2C
5f28_D9e-22177176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3452200.0AY345220.1 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659427.11e-165PREDICTED: MADS-box transcription factor 23
SwissprotQ6VAM41e-103MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLJ3MT811e-164J3MT81_ORYBR; Uncharacterized protein
STRINGOB08G23110.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-86AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]