PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G23190.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 207aa MW: 22590.2 Da PI: 8.2952

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G23190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.5	1.2e-44	13	152	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvka...eekewyfFskrdkkyat.gkrknratksgyW 83 lp+GfrF Ptdeelv +yL++k+ + +++ +i++vd+y ++PwdLp+ + + + + +yfF+ r++k++t g r +rat+ gyW OB08G23190.1 13 LPAGFRFFPTDEELVGYYLARKAMDAAFTC-AAIRDVDLYASDPWDLPSnssaastgggE--GgggGGECCYFFCMRSSKHPTsGARVRRATAGGYW 106 799***********************99.88**********9546666554441..133244456*****9976999****** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 k+tgkdk v++ +g+lvg+kktLvfy grap+g+kt+Wvmhey+ OB08G23190.1 107 KSTGKDKGVYAGngSGQLVGTKKTLVFYGGRAPRGHKTSWVMHEYS 152 ******98777889*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.22E-46	2	158	IPR003441	NAC domain
PROSITE profile	PS51005	45.289	13	174	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	14	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MNMISIMAEE QRLPAGFRFF PTDEELVGYY LARKAMDAAF TCAAIRDVDL YASDPWDLPS 60 NSSAASTGGG EGGGGGGECC YFFCMRSSKH PTSGARVRRA TAGGYWKSTG KDKGVYAGNG 120 SGQLVGTKKT LVFYGGRAPR GHKTSWVMHE YSRAPGGNLP RRAQAHDLPE LVEFGDIYGG 180 RMDYQQQQAS PSNSVGSFLD ERYFWNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-35	10	151	12	138	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G23190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004666	2e-64	AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBank	AP014964	2e-64	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695611.1	1e-102	PREDICTED: NAC transcription factor 29
Swissprot	Q9FLJ2	2e-45	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	J3MT89	1e-153	J3MT89_ORYBR; Uncharacterized protein
STRING	OB08G23190.1	1e-153	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-47	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]