PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23260.1
Common NameLOC102705002
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 294aa    MW: 32270.2 Da    PI: 4.9342
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.5e-292073255
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  +rlrWt +LHerFv av++LGG+++AtPk++l +m  +gLtl+h+kSHLQkYR 
  OB08G23260.1 20 TRLRWTGQLHERFVLAVAELGGADRATPKSVLTAMAEPGLTLYHLKSHLQKYRQ 73
                  7****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-281877IPR009057Homeodomain-like
SuperFamilySSF466897.17E-141875IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-202073IPR006447Myb domain, plants
PfamPF002491.8E-52172IPR001005SANT/Myb domain
PfamPF143791.1E-14129169IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSSQQQQQQY AGEAAAGART RLRWTGQLHE RFVLAVAELG GADRATPKSV LTAMAEPGLT  60
LYHLKSHLQK YRQAVSRGGN GGGPNDRSSS SDRQPADYDG DGTADEPRTI AYDVAGDAKA  120
PCDSSRTMMQ MQREVQRKLQ EQIEVQKHLQ LRMEAQGRYL QSVLRRAQQV LADHSLASSP  180
EAAKTELSEL SSAVEIECVS SPSPPRRYRR PAAAADSCVT TSSSSEGESK AAGSKRLHTS  240
DCTVEQPVQG KRAFPYLQRQ HQTEEEDEEQ DDDDEQEEYA GAEDGSSSEI DLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-161974156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-161974156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-161974156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-161974156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-161877160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703380.0AK070338.1 Oryza sativa Japonica Group cDNA clone:J023049D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660157.20.0PREDICTED: myb family transcription factor APL-like
TrEMBLJ3MT960.0J3MT96_ORYBR; Uncharacterized protein
STRINGOB08G23260.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.35e-46G2-like family protein