PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 228aa    MW: 22762 Da    PI: 11.2921
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.6e-323993558
   ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                  +Y+eClkNhAaslGghavDGCgEfmps+ ++ +++ +lkCaACgCHRnFHRr +e
  OB08G23460.1 39 VYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPCSLKCAACGCHRNFHRRLPE 93
                  7***************************99999*******************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-20790IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-273991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4184091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-294090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PRINTSPR012175.4E-987108No hitNo description
PRINTSPR012175.4E-9109125No hitNo description
PRINTSPR012175.4E-9143168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEAVVGVKYR PVVFPNGGAA AVGRSKARAG IGGGEGVGVY RECLKNHAAS LGGHAVDGCG  60
EFMPSPAADA ADPCSLKCAA CGCHRNFHRR LPEAPPSPPL LALPPPPPPP PFSTQPPTLP  120
LRHTPHQQYT LTSTSTALSL TPPSPPPPAP PPPPPAPPPP AAPPAAAAAA AAERRGGGGG  180
GPPEISPRGP PGARGGRFRG APPPRAPPAP PRPAPPGRSP GRRRSSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695618.12e-57PREDICTED: zinc-finger homeodomain protein 10-like
TrEMBLJ3MTB61e-147J3MTB6_ORYBR; Uncharacterized protein
STRINGOB08G23460.11e-148(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-22zinc finger homeodomain 1