PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 217aa    MW: 24614.2 Da    PI: 10.427
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.5e-1245100255
           AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  OB08G23780.1  45 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWG 100
                   58******************77779888877777999999**************97 PP
2AP228.73.2e-09143187148
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaia 48 
                   s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ +  +  ka+++
  OB08G23780.1 143 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYVSLIKDGKAHEK 187
                   89****99**********99966...3.6********987777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1544110IPR016177DNA-binding domain
SMARTSM003801.0E-1945114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1245109IPR001471AP2/ERF domain
PROSITE profilePS5103218.50545108IPR001471AP2/ERF domain
PfamPF008474.0E-946100IPR001471AP2/ERF domain
PRINTSPR003672.9E-54657IPR001471AP2/ERF domain
PRINTSPR003672.9E-590110IPR001471AP2/ERF domain
PfamPF008479.7E-5143176IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-6143181IPR016177DNA-binding domain
PROSITE profilePS510329.348144207IPR001471AP2/ERF domain
SMARTSM003800.0056144204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-5144185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKRRRGSSE SAAAASSDDS SSGGGGGVEA GRRQKRECPS QRSSAFRGVT RHRWTGRFEA  60
HLWDKNTWNE SQSKKGRQGA YDGEEAAARA YDLAALKYWG LDTVLNFPLS TYDEELKEME  120
GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL YLGTYVSLIK  180
DGKAHEKYFG KNDTESFKRT RPFSNFGYPN WDLKKFG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067691e-164AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588201e-164HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-88PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-76AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3MTE81e-157J3MTE8_ORYBR; Uncharacterized protein
STRINGOB08G23780.11e-158(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-78AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]