PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G24280.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 228aa    MW: 24060.5 Da    PI: 4.5783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G24280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-171665255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  OB08G24280.1 16 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 65
                  7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-181676IPR016177DNA-binding domain
PfamPF008472.7E-101665IPR001471AP2/ERF domain
PROSITE profilePS5103221.971675IPR001471AP2/ERF domain
SMARTSM003802.8E-311681IPR001471AP2/ERF domain
CDDcd000185.35E-171677No hitNo description
Gene3DG3DSA:3.30.730.101.0E-261677IPR001471AP2/ERF domain
PRINTSPR003671.5E-81728IPR001471AP2/ERF domain
PRINTSPR003671.5E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDRDGVSGGG EAPARRYKGV RLRKWGRWVS EIRMPNSRER IWLGSYESAE KAARAFDAAA  60
VCLRGSRGAG SLNFPESPPD VRYFPGAVLT VEQIQAEAAR HANSLVGSVV AAAAAAAXAA  120
GSSPYSQHPE AAAPARSTTS NDTAVSVPST AGGGAAVFDG DDDVIDWSFM DALPVMPASP  180
ARTNAELVPA MDDFMYGFLH PATMLPGEDG AEDGSVDQTF FSVDLWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-12177174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G24280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046621e-107AP004662.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0048G02.
GenBankAP0149641e-107AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-107CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649307.14e-94ethylene-responsive transcription factor ERF017
TrEMBLJ3MTJ81e-161J3MTJ8_ORYBR; Uncharacterized protein
STRINGOB08G24280.11e-162(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-24ERF family protein