PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G24440.1
Common NameLOC102715328
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 427aa    MW: 46639.6 Da    PI: 7.8588
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G24440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.14e-18218270155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k r+ Wtp L ++F +av+++ G   A P++ile+m+v+gL ++h+ SHLQkYR 
  OB08G24440.1 218 KHRVTWTPCLERKFERAVQHI-GVG-AKPRKILEHMNVEGLMRHHISSHLQKYRA 270
                   68*******************.665.99**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.77E-612125IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-413125No hitNo description
PROSITE profilePS5129411.586215273IPR017930Myb domain
SuperFamilySSF466893.23E-11216272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-18216271IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-18218271IPR006447Myb domain, plants
PfamPF002492.9E-6220269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEEETMLNFF PGGLRVMIVD RDMKAARIAT AKLSGLNYPV VATHFTPRAG LRALHGNKMV  60
GVQAVICDVH TLVSSRFDFR LFVETKFHIP VIYLLSMDNM VADEDKAFRN NLLETATYII  120
KKPLDSLSSN VMAQLWKVVA WRNYSLKLTN MVPPIDEATH AGVVGGDDDD ISIIEKSQVL  180
LKAMMAGGSR KRQLTINLDD SNRGSGSGEG DDSSKPQKHR VTWTPCLERK FERAVQHIGV  240
GAKPRKILEH MNVEGLMRHH ISSHLQKYRA RKHKKDLDER PPTTLRVPDS LFLKAILPTL  300
NASPRNPLTL IGNAAISFNN NVVPAAVQAP AMGQKLYLGP FSYQGLPPPS TQQNHIGAAG  360
AGGSLMAPPV EPTFSLTEPI MASLATHGED AGTDGAVVTS EEKVAEVVVE AEPFMVPDQV  420
SAPFAAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G24440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660187.10.0PREDICTED: two-component response regulator ORR33-like
TrEMBLJ3MTL30.0J3MTL3_ORYBR; Uncharacterized protein
STRINGOB08G24440.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP484222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.22e-13response regulator 1