PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G24780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 296aa    MW: 32907.7 Da    PI: 10.3273
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G24780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731002.1e-3136134398
        DUF573   3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                     r+w+ eDe+++L++li+++ak+g+   +s+d+ ++++++++++ +k+s++ql++K+rrLK+K++   ++ +k+g++p++ ++hd++++els+k+W
  OB08G24780.1  36 QPRVWNPEDEVTILRALISYRAKNGAlpASSQDTGKLHNMIRGQLTVKASTTQLSDKVRRLKHKYNLILTRvTKNGRDPDLPTAHDREVYELSRKVW 132
                   579***********************888899************************************999899*********************** PP

        DUF573  97 gs 98 
                   gs
  OB08G24780.1 133 GS 134
                   95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-2837133IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDGSRRPAAA SSQSQRRSKR PRSAPSHHSP EQQKRQPRVW NPEDEVTILR ALISYRAKNG  60
ALPASSQDTG KLHNMIRGQL TVKASTTQLS DKVRRLKHKY NLILTRVTKN GRDPDLPTAH  120
DREVYELSRK VWGSKTSGAG AGSAGGGGRV YENAEVAGSD EEQGSRESDE DMESGWDDRD  180
HRNKRMKAIT VANGNGSAIA IGGRSAHGNG SRKGDVAENE KDMYPYLWEA VEELSKEHPS  240
GTAFRKAFGV LDGSRARAME EKLNRFRLSE IRQQLRRMDL MKETIKMVLD ALEGTD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G24780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695633.10.0PREDICTED: mediator-associated protein 1-like, partial
TrEMBLJ3MTP70.0J3MTP7_ORYBR; Uncharacterized protein
STRINGOB08G24780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-14DNA-binding storekeeper protein-related transcriptional regulator