PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G24900.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 244aa    MW: 27002.5 Da    PI: 8.492
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G24900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.4e-34461452103
                   HHHHHHHHHCTGGGTTTSEESSSS.......SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.......nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                   Fl+k+y++++d+++++++sw ++g       +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k
  OB08G24900.1  46 FLTKTYQLVDDPATDHVVSWGDDGggggesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEK 133
                   9********************88879999999****************************************999.........************* PP

                   XXXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkkse 103
                   +ll++i+r+ks+
  OB08G24900.1 134 QLLCEIHRRKSA 145
                   *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-3636137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5542142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-3143142IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.8E-3046142IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MMPSVVEPTS VAIVIAAEPF LTMEWEEESD AARQKAATAA AVPAPFLTKT YQLVDDPATD  60
HVVSWGDDGG GGGESASSFV VWRPPEFARD ILPNYFKHSN FSSFVRQLNT YGFRKVVPER  120
WEFANEFFRK GEKQLLCEIH RRKSAAATWP PFPPPPPFFA PRHFAAGLFR DGDGMPTLAL  180
RLSRTSEKIV NEVAGSGSTK LFGVHLSRAD DQTSPGATRK RSLQEQPPTS PARKRTPMIE  240
HSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-223614220129Heat shock factor protein 1
5d5v_B1e-223614220129Heat shock factor protein 1
5d5v_D1e-223614220129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G24900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126169e-86CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.16e-76putative heat stress transcription factor B-4a
SwissprotQ6Z9R85e-77HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLJ3MTQ91e-178J3MTQ9_ORYBR; Uncharacterized protein
STRINGOB08G24900.11e-179(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-55heat shock transcription factor B4