PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G24950.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 211aa MW: 22475.5 Da PI: 10.0086

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G24950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.2	1.3e-16	125	179	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ ++l OB08G24950.1 125 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEMMEMQKNL 179 79*********************************************99998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-14	121	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.197	123	174	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.32E-26	125	177	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-15	125	178	No hit	No description
SuperFamily	SSF57959	6.88E-12	125	179	No hit	No description
Pfam	PF00170	2.4E-14	125	179	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	128	143	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900057	Biological Process	positive regulation of leaf senescence
GO:1903648	Biological Process	positive regulation of chlorophyll catabolic process
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDLKDGGGSE RRGAAGAGVG AAVNNSSIFF GNFGGANDAA GAGVMGFSPV GIGDPTMGNG 60 LMSGAAGMGG GGITVASVDT SVGPMDSVGR GDGDLSSPMA PVPYPFEGVI RGRRSGGIEE 120 KVVERRQRRM IKNRESAARS RARKQAYTME LEAEVQKLKE QNMELQKKQE EMMEMQKNLF 180 PEMQKNQVSE VVNNPYGQKK RCLRRTLTGP W

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G24950.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023288	0.0	AB023288.1 Oryza sativa Japonica Group mRNA for TRAB1, complete cds.
GenBank	AY323482	0.0	AY323482.1 Oryza sativa (japonica cultivar-group) bZIP transcription factor (aba1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659491.2	1e-137	PREDICTED: bZIP transcription factor TRAB1-like, partial
Swissprot	Q6ZDF3	1e-109	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	J3MTR4	1e-150	J3MTR4_ORYBR; Uncharacterized protein
STRING	OB08G24950.1	1e-151	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	4e-31	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]