PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G25030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 163aa    MW: 17938.8 Da    PI: 8.4766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G25030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.2e-212473255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAaka+++a+ +++g
  OB08G25030.1 24 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAVEFRG 73
                  8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-142473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-322481IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-232482IPR016177DNA-binding domain
SMARTSM003802.1E-362487IPR001471AP2/ERF domain
PROSITE profilePS5103225.0532481IPR001471AP2/ERF domain
PRINTSPR003671.4E-112536IPR001471AP2/ERF domain
CDDcd000182.25E-282781No hitNo description
PRINTSPR003671.4E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
XXXXAAPPAA AAAGQRRRRK KKNKYRGVRQ RPWGKWAAEI RDPRRAVRKW LGTFDTAEEA  60
AKAYDRAAVE FRGPRAKLNF PFPEQLPVHS DGNGNGDGAS AAAKSDTLSP SPCSADADDQ  120
GEQMAWPQGG GETGDQLWEG LQDLMKLDEG ELSWFPQPSD SWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-222182264ATERF1
3gcc_A4e-222182264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G25030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0628821e-112AK062882.1 Oryza sativa Japonica Group cDNA clone:001-108-D06, full insert sequence.
GenBankAP0043991e-112AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12.
GenBankAP0149641e-112AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-112CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695890.11e-107PREDICTED: ethylene-responsive transcription factor ERF109-like, partial
TrEMBLJ3MTS21e-110J3MTS2_ORYBR; Uncharacterized protein
STRINGOB08G25030.11e-111(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-17redox responsive transcription factor 1