PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G25230.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 207aa    MW: 22607.6 Da    PI: 8.9393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G25230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-132874354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  OB08G25230.1 28 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 74
                  58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3832574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-142875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-112875No hitNo description
PfamPF000103.7E-112874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-142988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVTDGECSAA AAVARKGGQQ QQQAVVVRSH SEAERKRRQR INAHLATLRT LVPSASRMDK  60
AALLGEVVRH VRELRCRADD ATEGVDVVPG EGDEVGVEEE EDAGCYCLPA DRGVGDRRWR  120
RRVRAWVCCA DRPGLMSDLG RAVRSVSARP VXXXXXXXXA TDNDRAVALS ALRAALRTVL  180
LNREELLAAA AAAEGYKRPR FSPRCST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G25230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279681e-56KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660214.12e-92PREDICTED: transcription factor bHLH30-like
TrEMBLJ3MTU21e-135J3MTU2_ORYBR; Uncharacterized protein
STRINGOB08G25230.11e-136(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-12bHLH family protein