PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G25610.1
Common NameLOC102703514
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 369aa    MW: 38430.9 Da    PI: 4.991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G25610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13135185154
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  OB08G25610.1 135 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 185
                   79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-14133190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-14133190No hitNo description
SuperFamilySSF474597.85E-17134198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV EQGKGVMELM VDDGANAYWD  60
AAAGGASSST VMAVPGFEEP DGGSSVIADA ALPPPPEHGG AAAGQVGASA AAPAAGRRKR  120
RRARTVKNKE EVESQRMTHI AVERNRRKQM NEYLAVLRSL MPASYVQRGD QASIIGGAIN  180
YVKEMEQLLQ SLEAQRHARC ARTYDVAADA AAAGVDADAA SAAAALPFAG FFTFPQYCMS  240
VTSTTARAAA AAAAAAENGN ADDDDGDASG SKPSTVADIE VTMVESHANL KVLSRRRPRQ  300
LLRMVAGLQG HRLAVLHLNV ASAGHMALYS LSLKVEDDCQ LSSVDDIAAA VHEIVETVEQ  360
EQQQQLSCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121RKRRR
2135146RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G25610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588610.0HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660228.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T45e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLJ3MTY00.0J3MTY0_ORYBR; Uncharacterized protein
STRINGOB08G25610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]