PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G25940.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 341aa    MW: 37209.8 Da    PI: 6.5212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G25940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.35.9e-1857106255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OB08G25940.1  57 RSKHSATEQRRRSKINDRFQLLRELLPHN----DQKRDKASFLLEVIEYIRFLQ 106
                   889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-2354127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1955130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.91455105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.85E-1657110No hitNo description
SMARTSM003532.6E-1361111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDAGSRSSGG AGFDDDDGLA ARREVSSSLK ELAVRVEGKG GSCSGSAGTD QLPNTPRSKH  60
SATEQRRRSK INDRFQLLRE LLPHNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSYPEWN  120
QENAKIVPWT NIYFRSSWKN AQNKSQIPAD TSPEPPEHLK NGSSYIFPFT GNSDNNNAVQ  180
TAAASGAQDQ AETDPMSRMP YRSADTPSPN NVAEKVTSQS QVQLVRPSPA ENNVGNGNML  240
NNSGLAIDEG TISLSSQYSQ ELLNKLNHAL ENSGIDLSQA SISVQINLGK RASTPAATST  300
SKEHTDPACN SQAMGHQLRL GDGAEEHLQL QASKRHKSDN S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G25940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696192.10.0PREDICTED: transcription factor BIM1-like, partial
TrEMBLJ3MU130.0J3MU13_ORYBR; Uncharacterized protein
STRINGOB08G25940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-54BES1-interacting Myc-like protein 2