PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G25950.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 251aa MW: 27248.2 Da PI: 6.5161

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G25950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.4e-37	38	95	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ ++s OB08G25950.1 38 GDPCPRCESRETKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKPSTS 95 678**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	38	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.164	39	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.9E-31	40	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MQEQQLEPGR RPAQQFATVD LRRPKGYAAP APPQASAGDP CPRCESRETK FCYYNNYNTS 60 QPRHFCKCCR RYWTKGGTLR NVPVGGGTRK KPSTSSPSSS SSSAASAAKR QKPSKKRRVT 120 PTEPTETSVL TPTAADSTKT ETTEATTEKT TSTTTTTKTT TPPVADTASE ITTELVVPAV 180 EEDSFTDLLQ PDSAAVTLGL DFADYPSLTK GLADPDLHFE WPPAAFDVAS YWPASTWFTD 240 PDPTAVFLDL P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	111	RKKPSTSSPSSSSSSAASAAKRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G25950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241364	6e-81	AK241364.1 Oryza sativa Japonica Group cDNA, clone: J065152E11, full insert sequence.
GenBank	AP004620	6e-81	AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBank	AP014964	6e-81	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	6e-81	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696049.1	1e-144	PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein MNB1A-like
Swissprot	P38564	3e-65	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	J3MU14	1e-180	J3MU14_ORYBR; Uncharacterized protein
STRING	OB08G25950.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-27	OBF binding protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]