PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G26390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 802aa    MW: 86985 Da    PI: 8.7204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G26390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32377433259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +DgynWrKYGqK+vk+se+prsY++Ct+++C+vkkkvers+ d++++ei+Y+g+Hnh+
  OB08G26390.1 377 EDGYNWRKYGQKQVKNSEHPRSYFKCTYPNCTVKKKVERSQ-DGQITEIVYKGSHNHP 433
                   8****************************************.***************7 PP
2WRKY104.55.7e-33589647159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  OB08G26390.1 589 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 647
                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-29373435IPR003657WRKY domain
SuperFamilySSF1182903.66E-26374435IPR003657WRKY domain
SMARTSM007743.1E-37376434IPR003657WRKY domain
PfamPF031064.1E-25377433IPR003657WRKY domain
PROSITE profilePS5081122.573377435IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37574649IPR003657WRKY domain
SuperFamilySSF1182908.89E-29581649IPR003657WRKY domain
PROSITE profilePS5081137.539584649IPR003657WRKY domain
SMARTSM007744.0E-38589648IPR003657WRKY domain
PfamPF031063.4E-25590647IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MSKPLKRSNR FHQKRAKVSG EDDTSALQLG AACDNPSSPP SSLPSPSLPL LRQNRLPFFL  60
SNLEVLAGKR QLQKWRDFKK RWGREKAGTE QHLSWDYHLF MDGTNNHGAL MDDWMLPSPS  120
PRTLMSSFLN EGLSSGSCSD VFGDNGSNKP QDGLGKSKSF VDSNREETAQ LGKKFESNLF  180
GANQKSSSNS CLSDRMASRT GFGVLKIDTS RVGYSAPIRS PVTIPPGVSP RELLESPVFL  240
PNAIAQPSPT TGKLPFLMSS NVKPSIPKKT EDETCHDGVF FFHPILGSKP PSFPVAEKGF  300
SVNHQNQPSV NDDHQVLSLR SSSTAAKDVS TETIVKPKTS DSMLDNGDHP SPANDQEESL  360
TNRNEEYSSD LIMTPAEDGY NWRKYGQKQV KNSEHPRSYF KCTYPNCTVK KKVERSQDGQ  420
ITEIVYKGSH NHPLPPSNRR ASVPFSCFDD LKDDNSEIFG SKSGQCTSTS WDNGPNSHLQ  480
DVHSEVLETK PSASLATTEH AETSVMDKQE AVDISSKLSI EGDDRVTHRA SLSLGYDANE  540
DNAECKRRKM DVYGATSIST NPIDIGAVAS RAVREPRVVV QTTSEVDILD DGYRWRKYGQ  600
KVVKGNPNPR SYYKCTHPGC SVRKHVERAS HDLKSVITTY EGKHNHEVPA ARNSGHPSSG  660
SAAAPQANGL LLHRRPEPAQ GGSFPQFGGP AASYGSAAGH PPAEQFGAAA AAGFSFGMLP  720
RSIAIPVPAP AITVRAQTAG RPPAMQGYPG LVLPRGEMKV NLLPQTGLPA ANGSTIAAGA  780
PCQQRMGRLP QPGSSSDVNS RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36377650878Probable WRKY transcription factor 4
2lex_A1e-36377650878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G26390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659543.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_006659544.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_015695952.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_015695953.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_015695954.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLJ3MU580.0J3MU58_ORYBR; Uncharacterized protein
STRINGOB08G26390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-113WRKY DNA-binding protein 2