PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G26810.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 260aa    MW: 28883.7 Da    PI: 8.601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G26810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-13145190655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  OB08G26810.1 145 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 190
                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16142201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-12143194No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10145190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMSS SGLLRYRSAP SSLLGEFCDD FLPPAPRAAS PDAADNVFSR  60
FLADHQIRDN SGWEESSLMP ENISGVKRQR ESSEPAQNGG GGLAHQFSLP KTSSEMAAIE  120
KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTRISERIR KLQELVPNMD KQTNTADMLD  180
LAVDYIKDLQ KQVKVLSDSR ASCTCSAKRH TEEKLVCQAL HKQKGQWSSG IIRIHQSDEG  240
KEEQKEEHRE KGPAMGGTIV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G26810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4658241e-176AF465824.1 Oryza sativa transcription factor RAU1 (rau1) mRNA, partial cds.
GenBankAK1001061e-176AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695660.11e-149PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR32e-58BH130_ARATH; Transcription factor bHLH130
TrEMBLJ3MUA00.0J3MUA0_ORYBR; Uncharacterized protein
STRINGOB08G26810.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]