PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G28340.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 25942.8 Da    PI: 8.2181
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G28340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92.1e-263584251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rie+ + rqv fskRr g++KKA+EL vLCdaeva+++fs+ g+lye++s
  OB08G28340.1 35 RIEDRTSRQVRFSKRRSGLFKKAHELAVLCDAEVALVVFSPAGRLYEFAS 84
                  8***********************************************86 PP
2K-box18.39.7e-081461854284
         K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                   ++++Ls+ eL+ Le++L ++l+ i++k +  +++    l k e
  OB08G28340.1 146 KINELSIAELRGLEEALSNALTDIKNKLMMKVVD---VLPKSE 185
                   589*********************7665544444...444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.9132686IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-352685IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-282848IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-2828105IPR002100Transcription factor, MADS-box
CDDcd002651.82E-342896No hitNo description
PfamPF003194.0E-263582IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-284863IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-286384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGEETRTLLS SPAAGEGGAG GVRRKKKRGR VELRRIEDRT SRQVRFSKRR SGLFKKAHEL  60
AVLCDAEVAL VVFSPAGRLY EFASSASSIE EIFGRYWDLL DRSIDLNTEA RDSQVDCAIQ  120
LGQKEHSVLD SVPKINDVTE CFLEPKINEL SIAELRGLEE ALSNALTDIK NKLMMKVVDV  180
LPKSEMKVHP WESFLILVGK TNELNMSNSC DIPALRIKDH LYGASSCKIH KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-162885360Myocyte-specific enhancer factor 2B
1tqe_Q4e-162885360Myocyte-specific enhancer factor 2B
1tqe_R4e-162885360Myocyte-specific enhancer factor 2B
1tqe_S4e-162885360Myocyte-specific enhancer factor 2B
6c9l_A4e-162885360Myocyte-specific enhancer factor 2B
6c9l_B4e-162885360Myocyte-specific enhancer factor 2B
6c9l_C4e-162885360Myocyte-specific enhancer factor 2B
6c9l_D4e-162885360Myocyte-specific enhancer factor 2B
6c9l_E4e-162885360Myocyte-specific enhancer factor 2B
6c9l_F4e-162885360Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227RRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G28340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660325.11e-129PREDICTED: truncated transcription factor CAULIFLOWER D-like
TrEMBLJ3MUQ31e-169J3MUQ3_ORYBR; Uncharacterized protein
STRINGOB08G28340.11e-170(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.18e-22MIKC_MADS family protein