PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G28540.1
Common NameLOC102704726
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 224aa    MW: 24082.4 Da    PI: 8.9715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G28540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.4e-32171531128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...tk.sgyWk.atgkdke 91 
                   lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p    a++ e yfF+ r   ++ g+ ++r+   t+  g Wk a g+dk+
  OB08G28540.1  17 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVITDLhNLHKLDPWDIP---GASDGEKYFFAVRPAMASGGRCSRRQmqaTAsGGCWKpAGGRDKP 109
                   79****************************.8899988***********...3467899******9999876655554233334889**66678*** PP

           NAM  92 vlsk...kgelvglkktLvfy..kgrapkge..ktdWvmheyrl 128
                   v+++   +++lvg+kk +vf   +g+ap +   ++ Wvmhey+l
  OB08G28540.1 110 VVASrcgGSHLVGVKKAMVFVprQGKAPAAAagSCCWVMHEYSL 153
                   *9998988999**********987777765544899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-4012177IPR003441NAC domain
PROSITE profilePS5100541.61617177IPR003441NAC domain
PfamPF023654.4E-2118153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MERGAAPVLV RHGGVELPPG FRFHPTDEEL VVQYLRRKAF GLPLPAAVIT DLHNLHKLDP  60
WDIPGASDGE KYFFAVRPAM ASGGRCSRRQ MQATASGGCW KPAGGRDKPV VASRCGGSHL  120
VGVKKAMVFV PRQGKAPAAA AGSCCWVMHE YSLALPMHNK GCLAEAEEWV VCRIFQRSSR  180
SPRRPVDHDV SRRTTPPSQS AASSSSSSSC VTSSSDQEEE VSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-291517915167NO APICAL MERISTEM PROTEIN
1ut4_B1e-291517915167NO APICAL MERISTEM PROTEIN
1ut7_A1e-291517915167NO APICAL MERISTEM PROTEIN
1ut7_B1e-291517915167NO APICAL MERISTEM PROTEIN
3swm_A1e-291517918170NAC domain-containing protein 19
3swm_B1e-291517918170NAC domain-containing protein 19
3swm_C1e-291517918170NAC domain-containing protein 19
3swm_D1e-291517918170NAC domain-containing protein 19
3swp_A1e-291517918170NAC domain-containing protein 19
3swp_B1e-291517918170NAC domain-containing protein 19
3swp_C1e-291517918170NAC domain-containing protein 19
3swp_D1e-291517918170NAC domain-containing protein 19
4dul_A1e-291517915167NAC domain-containing protein 19
4dul_B1e-291517915167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G28540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415661e-168CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence.
GenBankKJ6902491e-168KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659635.11e-164PREDICTED: NAC domain-containing protein 83-like
TrEMBLJ3MUS31e-163J3MUS3_ORYBR; Uncharacterized protein
STRINGOB08G28540.11e-164(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-41NAC domain containing protein 83