PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G28640.1
Common NameLOC102705273
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 33266.1 Da    PI: 6.3988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G28640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09152199455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  OB08G28640.1 152 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 199
                   8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-11146203No hitNo description
SuperFamilySSF474594.06E-17146214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16148212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MADFSPHHSL LLKVPATSAG AITTNDPNIS SFFLYNNQSH GAQAPQPANA NAPASGSAAA  60
AAAIADDASL ESSVSAVLDT SPLGSPSVDR KRKAADDSAT HCSAHSKDSC KDGKSRRGKK  120
PSREVEEKST TEEEAPKGYI HVRARRGQAT DSHSLAERVR RERISERMRM LQALVPGCDK  180
VTGKALILDE IINYVQSLQN QVEFLSMRIA SMSPVLYGFG LDSDGLQDQK IGGMFQEALA  240
MPAPVLNQSS PAPSQAIMDN TSTTSYSLQS QQGAISFSQD NGSYLMQAVG EPRQQEMLNQ  300
LVFNNMCSFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G28640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590410.0AK059041.1 Oryza sativa Japonica Group cDNA clone:001-021-D04, full insert sequence.
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659637.10.0PREDICTED: transcription factor bHLH137-like isoform X1
TrEMBLJ3MUT30.0J3MUT3_ORYBR; Uncharacterized protein
STRINGOB08G28640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-41bHLH family protein