PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G29600.1

Common Name

LOC102700550

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 163aa MW: 17080.8 Da PI: 8.2218

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G29600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.4e-16	87	136	11	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +kNRe+A rsR+RK+a+++eLe++v L aeN +L+++ +elk +++k + OB08G29600.1 87 MKNRESAERSRARKQAYLQELEQEVRLLRAENATLRDQCDELKALAEKAE 136 9*******************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-5	87	141	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-11	87	129	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.1E-12	87	133	No hit	No description
Pfam	PF00170	1.2E-12	87	135	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.71E-13	87	130	No hit	No description
PROSITE profile	PS50217	10.059	88	129	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MERAVTGTAG SSGGDDELVL PPAASEDALG LRLPSSRSYS SSGGGAGGAA GRRLAASLEQ 60 ELLYRAELHQ QQVASGGGGG RGGGGAMKNR ESAERSRARK QAYLQELEQE VRLLRAENAT 120 LRDQCDELKA LAEKAETEAP APAPTKPTCR GRHSRRSDQP VNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	84	GGRGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G29600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660364.1	1e-110	PREDICTED: G-box-binding factor 4-like
TrEMBL	J3MV29	1e-109	J3MV29_ORYBR; Uncharacterized protein
STRING	OB08G29600.1	1e-110	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15193	17	19

Link Out ? help Back to Top
Entrez Gene	102700550