PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G10150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LFY
Protein Properties Length: 299aa    MW: 32513.3 Da    PI: 9.7714
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G10150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY44.33.2e-14638221253
       FLO_LFY 221 gedgeerqrehPfivtepgevargkknGLDYLf 253
                   g +g e qrehPf+vtepgevar+k nGLD ++
  OB09G10150.1   6 GGGGGEWQREHPFVVTEPGEVARAKNNGLDSVW 38 
                   67789*************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016985.5E-12638IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTTVAGGGGG EWQREHPFVV TEPGEVARAK NNGLDSVWPL PAVGAAATGF SVSTLVEWVL  60
MNSSLEPFLV KAWWWQSGQL GSLLIALFFS SVSSVVAMQI TISIVGVLGR STVGFSLNID  120
GYRLADDKGV HRCFAHLLPL RQGSFRPDDS LDPGTVYFLL PQFIFQSKSS TVNLAYLMNH  180
LTSLARKGGY GTPAPALLRR SSPAAGSDIV AETLLRLNDG SVVAAVLLNK QHQQQHVVTT  240
IITILDPIIS IDHTHAAKHE RNETVQHIGI NTYYTLGQKS IKRKLYRLNG TAFRSISVH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G10150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MVI70.0J3MVI7_ORYBR; Uncharacterized protein
STRINGOB09G10150.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-08floral meristem identity control protein LEAFY (LFY)