PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G12530.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 287aa    MW: 31265.2 Da    PI: 8.2218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G12530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18138187255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   gy+G+r+++ +g+W++eIrdp+    r  r++lg+f+taeeAa a++a +++++g
  OB09G12530.1 138 GYHGIRQRP-WGSWASEIRDPV----RgVRVWLGTFDTAEEAALAYDAEARRIHG 187
                   89*******.**********63....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-20138195IPR016177DNA-binding domain
PfamPF008471.3E-10138187IPR001471AP2/ERF domain
SMARTSM003805.3E-34138201IPR001471AP2/ERF domain
PROSITE profilePS5103222.076138195IPR001471AP2/ERF domain
PRINTSPR003672.4E-10139150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-30139196IPR001471AP2/ERF domain
CDDcd000181.02E-27139194No hitNo description
PRINTSPR003672.4E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSSPASSSIP ILLAHEAPDH VRRTGDPRRQ AAAGVDSAPR RGVMGGQDDD DGGKDEEEEA  60
WCGRGTMGGR LPGVHAQRRR RRRRPRRMCL APSRCCCKLS SGKFLVVRSS GELDAGVAAV  120
EPAPTGTPRR QRVRRRYGYH GIRQRPWGSW ASEIRDPVRG VRVWLGTFDT AEEAALAYDA  180
EARRIHGRKA RTNFPAVDPP PPAPASCYHH HRTTTPLCFL LDGDLFLGGE APHGMGSAAT  240
STASAELIQL ECCSDDVMDS LLAGSDVASG CRDMDMDIWS FLYLCSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18139195663ATERF1
3gcc_A1e-18139195663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682QRRRRRR
27783RRRRRRR
37885RRRRRRPR
47886RRRRRRPRR
57986RRRRRPRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G12530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900565e-54AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence.
GenBankAK0686885e-54AK068688.1 Oryza sativa Japonica Group cDNA clone:J013163J01, full insert sequence.
GenBankAK1060575e-54AK106057.1 Oryza sativa Japonica Group cDNA clone:001-206-F09, full insert sequence.
GenBankAP0057055e-54AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09.
GenBankAP0067585e-54AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05.
GenBankAP0149655e-54AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankDQ4539645e-54DQ453964.1 Oryza sativa (indica cultivar-group) clone BAC 101O9 chromosome 9 map Sub1 locus, complete sequence.
GenBankEU4294425e-54EU429442.1 Oryza nivara strain IRRG-80470 submergence-1B mRNA, partial cds.
GenBankEU4294435e-54EU429443.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1B mRNA, complete cds.
GenBankEU4294445e-54EU429444.1 Oryza rufipogon strain IRRG-80506 submergence-1B mRNA, partial cds.
GenBankEU8475205e-54EU847520.1 Oryza sativa Japonica Group clone OsEP4 AP2/ERF domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696560.11e-123PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLJ3MW740.0J3MW74_ORYBR; Uncharacterized protein
STRINGOB09G12530.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-18ERF family protein