PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G12860.1

Common Name

LOC102704445

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 201aa MW: 22256.4 Da PI: 8.4723

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G12860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.3	1.1e-15	7	36	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPktil++m+vkgLtl h+kSHLQkYRl OB09G12860.1 7 EATPKTILRTMGVKGLTLFHLKSHLQKYRL 36 7****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.3E-10	6	37	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.7E-6	6	38	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-14	7	37	IPR009057	Homeodomain-like
Pfam	PF14379	8.2E-22	77	122	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MHNYLAEATP KTILRTMGVK GLTLFHLKSH LQKYRLGKQS GKEASEQSKD ASYLLDAQGG 60 MSVSPRVSTQ DVKENQEVKE ALRAQMEMQR RLHEQVEVQK HVQIRMEAYQ KYIDTLLEKA 120 CKIVSDQLAS SGFSISDNDL PELSGGGGVM CGSTDTLTSA IFHQLSVSPI NLHNPEGKPM 180 PSGIDGQMIL QKSPELKRKS C

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G12860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069336	1e-158	AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660515.1	1e-148	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	2e-45	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	J3MWA7	1e-147	J3MWA7_ORYBR; Uncharacterized protein
STRING	OB09G12860.1	1e-147	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-48	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	102704445

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]