PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G14930.1
Common NameLOC102706782
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 608aa    MW: 66819.4 Da    PI: 6.786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G14930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.6e-07317339426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   +lC  f  tG C++G++C+++H+
  OB09G14930.1 317 RLCFKFTSTGSCPRGSKCHYMHD 339
                   67888888**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073804.44E-4016239No hitNo description
PROSITE profilePS5010314.333313341IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6316343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7317341IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5317339IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5345374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211346373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5349374IPR000571Zinc finger, CCCH-type
PfamPF046772.8E-35384501IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541975.29E-10392490IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.102.1E-7393496IPR011146HIT-like domain
PfamPF046763.6E-17528605IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAAAASPSPA TPPRILLAGD ANGRLHQLFK RVTSVNQSTG PFHALLCVGQ FFSPEAEGGD  60
GEAAEYLEGR AAVPIPTYFT GDYGPAAPRL LAKAAAGARG FSPGGIQICN NLFWLRGSAR  120
FTLHGLSVVY LSGRKGPGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP AGLVNGTDTS  180
NTPPQILDPH GYDPVVAELV AEIKPRYHVA GSKDVFYARE PYVNDSAAHV TRFIGLANVG  240
NKEKQKFIHA ISPTPASIMS SADIHARPPN TTLSPYISPA KLVHVEEAPK RPAEDADLQY  300
WRYDVKKQRH GEASGNRLCF KFTSTGSCPR GSKCHYMHDE EAREHYSRNV CFDFLNKGKC  360
EKGPECRFVH SLSDEGAVRD TKSRSERRRV ESSCWFCLSS PDVESHLVIS IGEGYYCALA  420
KGPLVPNHVL VIPVEHCAST LMMPAEAEAE LGRYKDALGK YFEKEGKTAV YFEWVSQHSR  480
HANLQVVPVP LSKATSIKKI FHLAAQRLGF EFSVVNQDGA ANRGRELLRS EYDSKSSLFY  540
VELPEGSVLL HLVDSNEKFP AQFGREVLAG LLSMADRADW RNCKVSKEEE IQMVDDFKQG  600
FREFDPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U6e-11394605675887CWF19-like protein 2
6id1_U6e-11394605675887CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G14930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118750.0AK111875.1 Oryza sativa Japonica Group cDNA clone:J033043A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696467.10.0PREDICTED: zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLJ3MWW40.0J3MWW4_ORYBR; Uncharacterized protein
STRINGOB09G14930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]