PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G15200.1
Common NameLOC102722608
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 287aa    MW: 30454.8 Da    PI: 6.6758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G15200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21106155255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  OB09G15200.1 106 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 155
                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.36E-30105165No hitNo description
PROSITE profilePS5103223.354106163IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-23106165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-33106165IPR001471AP2/ERF domain
SMARTSM003801.5E-35106169IPR001471AP2/ERF domain
PfamPF008477.0E-15107155IPR001471AP2/ERF domain
PRINTSPR003672.4E-11107118IPR001471AP2/ERF domain
PRINTSPR003672.4E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASGSPPLQ SQFGPTSPFS FPSAAAFVYG GGQAQPELTP  60
AQMHYIQARL HTQRQAAQAG ALGPRPQPMK AASAAAVATP PRPQKLYRGV RQRHWGKWVA  120
EIRLPRNRTR LWLGTFDTAE EAALAYDQAA YRLRGDAARL NFPDNAASRG PLHASVDAKL  180
QTLCQNIAAA KNTKKSSASA SATATSSAPT SNCSSPSSDD ASSCLESADS SPSLSSSHAA  240
TTAETSATVP EMQQLDFSEA PWDEAAAFAL TKYPSYEIDW DSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20105163463ATERF1
3gcc_A2e-20105163463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G15200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055250.0AP005525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0564H06.
GenBankAP0055800.0AP005580.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1759_F09.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660575.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
TrEMBLJ3MWZ10.0J3MWZ1_ORYBR; Uncharacterized protein
STRINGOB09G15200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-37ERF family protein