PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G16960.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 487aa    MW: 52954.1 Da    PI: 9.7451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G16960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.62.9e-29137196159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  OB09G16960.1 137 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 196
                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.473132198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-28135198IPR003657WRKY domain
SuperFamilySSF1182904.32E-25135198IPR003657WRKY domain
SMARTSM007741.4E-34137197IPR003657WRKY domain
PfamPF031065.3E-24138196IPR003657WRKY domain
PfamPF009541.9E-8383467IPR000858S-locus glycoprotein domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048544Biological Processrecognition of pollen
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDTAWRGGGR SPVCLDLCVG LSPAKILEAK VTQMSEENRR LTEVITRLYG SHVARLGLDD  60
AASPQRRPVS PLSSRKRGRE SMETANSCDG NGNGQKSGAA AEADHAESFA MDDGTCRRIK  120
VSRVCRRIDP SDATLVVKDG YQWRKYGQKV TRDNPSPRAY FRCAFAPSCP VKKKVQRSAE  180
DSSLLVATYE GEHNHPLPSR PGELAAGGGG GVGSAGSLPC SISINPSGPT IALDLTKNGG  240
AVQVANRDTP LNGTAGVLVI NGLGVLFLLD SSGQGRMVVV EHDSSWHGVF IISGGGGTAA  300
RVREPCRARP EQQQLAVVVI RSLIEHPIAD MRLDLDTNLQ TGAKWFLTSW RAPDDPATRE  360
YRRVLEKKGL PDCVSWRGAT KKYRMGAWNG LWFSGVPKMA FPSSSVFGNQ EVDRPNKMAF  420
IFNPFAGGPL SRLVLNEAGI AQRLVWDPSS KAWNAYAQTP HKITVAYEHE MLMSWLIHGR  480
SDIRTKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-211362021376WRKY transcription factor 1
5gyy_A3e-1924246056263S-receptor kinase SRK9
5gyy_B3e-1924246056263S-receptor kinase SRK9
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G16960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696342.10.0PREDICTED: uncharacterized protein LOC102714490
SwissprotQ6IEK51e-130WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLJ3MXG70.0J3MXG7_ORYBR; Uncharacterized protein
STRINGOB09G16960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-46WRKY DNA-binding protein 40