PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G17750.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 225aa    MW: 24588.7 Da    PI: 8.1272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G17750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  l+ +v  +G+g +W + ++++g++R++k+c++rw++yl
     OB09G17750.1 14 KGPWAAEEDAALKAYVDAHGTGgNWIALPHKIGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.606966IPR017930Myb domain
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002494.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-231580IPR009057Homeodomain-like
SuperFamilySSF466891.44E-171588IPR009057Homeodomain-like
CDDcd001678.35E-81662No hitNo description
PROSITE profilePS500904.13563101IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAAE EDAALKAYVD AHGTGGNWIA LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTEEEDRLIC SLYIAIGSSG GGSYTGGHDA WLDTSTPPMS TSIGDTTTTT  120
AGGDSSSSTP TVSSATTPFV GSMIDMEDEI DMLLQQIKCF DESDVDDQRL IGVDEATAGA  180
AEHYLRALIN EAGRRRRRRR RLELLLYSRS GLRVPRLRSA RLRTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192201GRRRRRRRRL
2193200RRRRRRRR
3194200RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G17750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632609e-92BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696360.18e-64PREDICTED: transcription factor RAX2-like
TrEMBLJ3MXP61e-164J3MXP6_ORYBR; Uncharacterized protein
STRINGOB09G17750.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-51myb domain protein 36