PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G18440.1
Common NameLOC107304984
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 337aa    MW: 37400.9 Da    PI: 6.0657
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G18440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK567.6e-18195246252
        RWP-RK   2 ekeisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    k ++ +dl++yF+ + k+AA   L +++T+LK  CR +G++RWP+R+i +l
  OB09G18440.1 195 IKAMTKHDLKSYFHITQKEAAEIgLSIGTTALKSVCRANGLPRWPYRQIMKL 246
                   57899****************84499***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.925176266IPR003035RWP-RK domain
PfamPF020427.9E-18198246IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MATGGSSSSS NAPSGEGAGS GKAPMVPVGS IECLRKRCRL LRVLIHVNDH RKAVVVLHAG  60
EDGKPDHIIM QNVSPDNDHS VQSTFLQDVA DWSTESQIEA LNDWYSSFRM DNTGVFYDSD  120
QNVIFGVPRG HPGGDVPRSL AILAPAPKKN ERRKAPVAGS SSSSADGLVL VVKTDQTGAI  180
DKRMKLTFPD QRKRIKAMTK HDLKSYFHIT QKEAAEIGLS IGTTALKSVC RANGLPRWPY  240
RQIMKLDNEF NNNLKKKITG WNLGRAIKGV TKAFELRKKK ERMYEELMSN MPEQLQGIDE  300
IVHNLQEDYS AADQDTDVED EEDNEEMDSN MENSDDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G18440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.10.0PREDICTED: uncharacterized protein LOC107304984
TrEMBLJ3MXW50.0J3MXW5_ORYBR; Uncharacterized protein
STRINGOB09G18440.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.17e-10RWP-RK domain-containing protein