PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G18840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 274aa    MW: 30770.7 Da    PI: 9.428
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G18840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.91.3e-3225122298
        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                   +++r+ws+ De+v+L+Gli+++ak+g+   +++did++++++++++s+kvs +ql++K+rrLK+K++   ++ak+g+e +f ++hdq+i+e++kk+W
  OB09G18840.1  25 RPSRVWSQADELVILRGLITYRAKRGVlpGSTQDIDKLHSYIRSQLSVKVSITQLSDKVRRLKQKYQLLATRAKTGRE-DFPTPHDQSIYEVAKKVW 120
                   679************************888899***************************************999999.9***************** PP

        DUF573  97 gs 98 
                   g+
  OB09G18840.1 121 GT 122
                   95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-2827121IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGASESRAKR PRTAAVASSA DHSKRPSRVW SQADELVILR GLITYRAKRG VLPGSTQDID  60
KLHSYIRSQL SVKVSITQLS DKVRRLKQKY QLLATRAKTG REDFPTPHDQ SIYEVAKKVW  120
GTMSIAGDGG GSGYDNVDAG ESEDERYGEE SDDDMECGRD NRQRKNQRLM PVTMANGNGT  180
GMGAVNANVR GRSDFEKGKD VYPYLWETVE ELSSQHPSGA VFKKAFELLE GSKAQVMEEK  240
LRKFRLTEMR QQLRRMDLMK DTLSMVLDAL EMAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G18840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661301.20.0PREDICTED: uncharacterized protein LOC102704642, partial
TrEMBLJ3MY050.0J3MY05_ORYBR; Uncharacterized protein
STRINGOB09G18840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-16DNA-binding storekeeper protein-related transcriptional regulator