PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G19290.1
Common NameLOC102713571
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 274aa    MW: 29242.7 Da    PI: 5.2229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G19290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20131181256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+++++g+
  OB09G19290.1 131 VYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAALEFRGA 181
                   69*******.**********82....48*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-36131194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-32131189IPR001471AP2/ERF domain
PfamPF008473.0E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23131190IPR016177DNA-binding domain
PROSITE profilePS5103225.185131188IPR001471AP2/ERF domain
CDDcd000183.87E-32132188No hitNo description
PRINTSPR003671.8E-11132143IPR001471AP2/ERF domain
PRINTSPR003671.8E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTKKLMPAMA AAKQQDSCKT RLEDRGISQA SSPARRWISA EQEHSIIVAA LRYVVSGCTT  60
APPEIVTVAC GEACGLCGID GCLGCDNFGA EAAAGTEEAV MATGYAGATT AGPAAVEGGG  120
LRVRRRRKKN VYRGVRQRPW GKWAAEIRDP RRAVRKWLGT FDTAEEAARA YDRAALEFRG  180
ARARLNFPCS EPLPLPSQRN GNGGDAAVTA ATPTELSPTH SLCSADAEET APVDWQTGVD  240
EAGSNQFWDG LQDLMNLDEE DIWFAPFSGA ASSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21128189264ATERF1
3gcc_A2e-21128189264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G19290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671950.0AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence.
GenBankAP0058910.0AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankEU6229340.0EU622934.1 Oryza sativa Indica Group EATB (EATB) mRNA, complete cds.
GenBankKP2128990.0KP212899.1 Oryza sativa Indica Group cultivar IR64-Sub1 AP2 domain containing protein (EATB) gene, complete cds.
GenBankKP2129000.0KP212900.1 Oryza sativa Indica Group cultivar PS-2 AP2 domain containing protein (EATB) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660699.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ061e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLJ3MY500.0J3MY50_ORYBR; Uncharacterized protein
STRINGOB09G19290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-17ERF family protein
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]