PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G21280.1
Common NameLOC102711094
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 611aa    MW: 68158.6 Da    PI: 5.8056
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G21280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3432.24.9e-132394181353
                   XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
          EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWke 97 
                   e+l +rmwkd+++l+r+ker+  l + + a+++++k + +++qa rkkmsra DgiLkYMlk mevcna+GfvYgiip+kgkpv+gasd++raWWke
  OB09G21280.1  39 EDLARRMWKDRVKLRRIKERQHTL-ALQLAELDKSKPKAISDQAMRKKMSRAHDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGASDNIRAWWKE 134
                   89*******************985.578888****************************************************************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-- CS
          EIN3  98 kvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtpp 194
                   kv+fd+ngpaai+ky+++n++++++ s+   + +++hsl++lqD+tlgSLLs+lmqhc+ppqr++plekg++pPWWP+G+e+ww +lgl++ q  pp
  OB09G21280.1 135 KVKFDKNGPAAIAKYESENMASADAPSS---GIKNQHSLMDLQDATLGSLLSSLMQHCNPPQRKYPLEKGTPPPWWPSGDEDWWIALGLPRGQI-PP 227
                   *********************9988888...88************************************************************9.9* PP

                   ---GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX....XXXXXXXXXXXXXXXXXXXXXX CS
          EIN3 195 ykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss....slrkqspkvtlsceqkedvegk 287
                   ykkphdlkk+wkv+vLtavikhmsp++++ir+++r+sk+lqdkm+akes ++lsvl++ee+++ ++   +s       ++++  t+s+++++dv+g 
  OB09G21280.1 228 YKKPHDLKKVWKVGVLTAVIKHMSPDFDKIRNHVRKSKCLQDKMTAKESLIWLSVLQREERLVYSIDNGMSevthLALEDRNGDTHSSNNEYDVDGI 324
                   ***************************************************************999999554654333488899999********99 PP

                   XXXX.XXXXXXXXXX.................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXX CS
          EIN3 288 keskikhvqavktta.................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisq 351
                   +e   ++++ +++++                                 g++   krk+++++ ++v ++ev    +    + +++++i++d+n+++q
  OB09G21280.1 325 EEAPLSTSSRDDEHDlplavvqlseehvptrreranvkrpnqvvpkkaGTKEPPKRKRPRHSATAV-EHEV---QRAVDAP-ENSRNIIPDMNRLDQ 416
                   999999999999988*********************************9*******9665555555.5545...4555555.57899******9998 PP

                   XX CS
          EIN3 352 ne 353
                    e
  OB09G21280.1 417 VE 418
                   65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.8E-12539287No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-70161294IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.27E-61167291IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MMDHLAIIAT ELGDSSDFEV EGIQNLTEND VSDEEIEAED LARRMWKDRV KLRRIKERQH  60
TLALQLAELD KSKPKAISDQ AMRKKMSRAH DGILKYMLKL MEVCNARGFV YGIIPDKGKP  120
VSGASDNIRA WWKEKVKFDK NGPAAIAKYE SENMASADAP SSGIKNQHSL MDLQDATLGS  180
LLSSLMQHCN PPQRKYPLEK GTPPPWWPSG DEDWWIALGL PRGQIPPYKK PHDLKKVWKV  240
GVLTAVIKHM SPDFDKIRNH VRKSKCLQDK MTAKESLIWL SVLQREERLV YSIDNGMSEV  300
THLALEDRNG DTHSSNNEYD VDGIEEAPLS TSSRDDEHDL PLAVVQLSEE HVPTRRERAN  360
VKRPNQVVPK KAGTKEPPKR KRPRHSATAV EHEVQRAVDA PENSRNIIPD MNRLDQVEIP  420
GMANQLTSFN EEGNTSEAFQ HRGNTQGQTH LPGADFNHYG NAQAANATPV SICMGGQPVP  480
YESSDNSRSK TGNIFPLDSD SGFNNLPSSY QTVPPKQSLP LSIMDHHVVP MGIRTPADNS  540
PYGDQIIGSG NSTSVPGDMQ LIDYPFYGEQ DKFAGSSFAG LPLDYISISS PIPDIDDLLL  600
HDDDLMEYLG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-661672909132ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G21280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087580.0AC108758.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence.
GenBankAK0659790.0AK065979.1 Oryza sativa Japonica Group cDNA clone:J013047J08, full insert sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660770.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_015696822.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-147EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLJ3MYP90.0J3MYP9_ORYBR; Uncharacterized protein
STRINGOB09G21280.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-149ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]