PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G21960.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 343aa MW: 37103.5 Da PI: 6.5111

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G21960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2.1e-09	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq OB09G21960.1 157 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 204 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.73E-10	151	208	No hit	No description
SuperFamily	SSF47459	4.19E-17	151	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-17	153	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MDGDYVSGLL MSAAAAGLDL GVLDAGGGGG FLETLCGGPG FAERAARMCG GGGGGGALFG 60 LPGVAAAEGA GERRCREGQG RHLERQRHRQ RPVGEGKLPD SKKCKTEVKP KVEEAASDGS 120 VGDRAQKQSK GKNSKPAAEP PKDYVHVRAR RGQATDSHSL AERVRREKIS QRMKVLQDLV 180 PGCNKVVGKA LMLDEIINYV QSLQQQVEFL SMKLATVNPQ LDFSNLSTLL QKDMFQPCGT 240 TLNSVFPLES AGAAFPFCDQ ADFFQSFGLG TMENQCTLDL ANTALPHAEH TQYAFQKQQR 300 DLWEDNGFHY NDEQSQEDAV SAPDFDVTSS SRSHRGRVLE DQR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MDGDYVSGLL MSAAAAGLDL GVLDAGGGGG FLETLCGGPG FAERAARMCG GGGGGGALFG  60
LPGVAAAEGA GERRCREGQG RHLERQRHRQ RPVGEGKLPD SKKCKTEVKP KVEEAASDGS  120
VGDRAQKQSK GKNSKPAAEP PKDYVHVRAR RGQATDSHSL AERVRREKIS QRMKVLQDLV  180
PGCNKVVGKA LMLDEIINYV QSLQQQVEFL SMKLATVNPQ LDFSNLSTLL QKDMFQPCGT  240
TLNSVFPLES AGAAFPFCDQ ADFFQSFGLG TMENQCTLDL ANTALPHAEH TQYAFQKQQR  300
DLWEDNGFHY NDEQSQEDAV SAPDFDVTSS SRSHRGRVLE DQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G21960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059036	0.0	AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651378.1	1e-177	transcription factor BHLH089-like
Swissprot	Q9SRT2	3e-53	BH062_ARATH; Transcription factor bHLH62
TrEMBL	J3MYW7	0.0	J3MYW7_ORYBR; Uncharacterized protein
STRING	OB09G21960.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]