PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G23490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 240aa    MW: 27488 Da    PI: 12.2599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G23490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.62e-103367137
           AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfg 37
                  + y+GVr++ + grWv+e+r+p   g + +r +lg+f 
  OB09G23490.1 33 PVYRGVRRRGRAGRWVCEVRVP---GrRGTRLWLGTFA 67
                  68*******************9...6455*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-63367IPR001471AP2/ERF domain
PROSITE profilePS5103212.8793466IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-83468IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-133468IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDMEEAHLEY RTVWSEPPKK PAGRTKFRET RHPVYRGVRR RGRAGRWVCE VRVPGRRGTR  60
LWLGTFAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRPCPSPPR  120
RPRLPPRRSP TTTTTTMTNT SCRCRRRPSF PTPRSSCSTT GSGSAGWTPG RTTRAWRMGC  180
SWSRRPPERG GRTASSPAPT CRSGATDLAG QQQKFCTNFG RICFPGNRVV GNFEQSRQWD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G23490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8102820.0DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MZC02e-52J3MZC0_ORYBR; Uncharacterized protein
STRINGOB09G23490.13e-53(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.19e-13dehydration response element B1A