PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G23520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 70aa    MW: 7534.53 Da    PI: 10.9894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G23520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-192670250
           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50
                  ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+
  OB09G23520.1 26 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAA 70
                  689******.7*********....4456********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-172670IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-222670IPR001471AP2/ERF domain
PROSITE profilePS5103218.5582670IPR001471AP2/ERF domain
PfamPF008475.5E-142670IPR001471AP2/ERF domain
PRINTSPR003676.8E-92738IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-162770IPR016177DNA-binding domain
CDDcd000181.46E-173270No hitNo description
PRINTSPR003676.8E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MAAQESGKVV VAGGAAAAKA CRGRRRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE  60
EAARAYDEAA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G23520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8102821e-114DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661124.12e-26dehydration-responsive element-binding protein 2B
SwissprotQ6J9S13e-23RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA6MCZ91e-39A6MCZ9_ORYBR; AP2 domain-containing protein
TrEMBLJ3MZC32e-40J3MZC3_ORYBR; Uncharacterized protein
STRINGOB09G23520.13e-41(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-10related to AP2 11
Publications ? help Back to Top
  1. Zhang S, et al.
    New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification.
    Plant Mol. Biol., 2007. 64(5): p. 589-600
    [PMID:17534720]
  2. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]