PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G23870.1

Common Name

LOC102719513

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 26590.3 Da PI: 5.8718

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G23870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	30	82	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k OB09G23870.1 30 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 82 456*************************************************9 PP
2	HD-ZIP_I/II	123.8	7.9e-40	29	120	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ e+L+ke+++L ++l++ OB09G23870.1 29 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLSSYESLKKEKHALIKQLEK 120 8**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-19	17	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	24	84	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-19	27	91	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-16	27	88	IPR001356	Homeobox domain
CDD	cd00086	1.88E-16	29	85	No hit	No description
Pfam	PF00046	7.5E-17	30	82	IPR001356	Homeobox domain
PRINTS	PR00031	7.9E-6	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-6	64	80	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.9E-14	84	125	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDGEEDSEWM MDLVVGGGKG GGKGGGADRK KRFSEEQIKS LESMFATQTK LEPRQKLQLA 60 RELGLQPRQV AIWFQNKRAR WKSKQLEREY SALRDDYDAL LSSYESLKKE KHALIKQLEK 120 LAEMLHEPPG KYGDNAGAGA GDGARSGGMK EEFVDARATL YSSTEGGGTA PKLVSHFGSD 180 DVDAGLFLRP SSQHTPHSAA AAAGGFTSSD PADHHSFNFH STWPSSTEQT CSSSQWWEFE 240 SE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G23870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059755	0.0	AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence.
GenBank	AK103160	0.0	AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence.
GenBank	CT830847	0.0	CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660877.1	1e-178	PREDICTED: homeobox-leucine zipper protein HOX6-like
Swissprot	Q651Z5	1e-122	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-122	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	J3MZF8	1e-177	J3MZF8_ORYBR; Uncharacterized protein
STRING	OB09G23870.1	1e-177	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-43	homeobox 7

Link Out ? help Back to Top
Entrez Gene	102719513

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]