PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G23920.1
Common NameLOC102719794
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 211aa    MW: 23182.9 Da    PI: 5.7442
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G23920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-07333434
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                  ++C+ +e+ +  lfC  ++  lC+ C ++ H
  OB09G23920.1  3 TICDVCESAPSVLFCAADEAALCRACDEKVH 33
                  68**************************998 PP
2zf-B_box27.66.1e-095291237
      zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                  + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  OB09G23920.1 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                  6799****************************96555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.983147IPR000315B-box-type zinc finger
CDDcd000211.22E-7345No hitNo description
PfamPF006439.2E-6341IPR000315B-box-type zinc finger
PROSITE profilePS501199.5275196IPR000315B-box-type zinc finger
SMARTSM003364.0E-115196IPR000315B-box-type zinc finger
PfamPF006434.6E-75291IPR000315B-box-type zinc finger
CDDcd000211.11E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTICDVCES APSVLFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP NKVQRCDICE  60
NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGS TDDVAMQQND  120
PEIQIDQKKS PHSVTKEQMA NHHNVSDDPA SDGNCDDQGN IDSKMIDLNM RPVRTHGQGS  180
NSQTHGVDLS VNNHDSPGVV PTCNFERNAD K
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G23920.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221720.0AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660878.11e-157PREDICTED: B-box zinc finger protein 19
SwissprotC0SVM55e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLJ3MZG31e-155J3MZG3_ORYBR; Uncharacterized protein
STRINGOB09G23920.11e-156(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-77DBB family protein