PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G24010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 187aa    MW: 19061 Da    PI: 5.1105
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G24010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70285.41.4e-265311393153
        DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                    +++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqtavsigGhvfkGiL+d G+e
  OB09G24010.1  53 AGDQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 113
                   567788888999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.6E-2357113IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016248.8E-2364112IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAGFPLGGGS HSRDNPAPPV PPVHPTDAAS FLYATRGGSF QLWQQQEQQP PCAGDQQMVT  60
VAERFPREVS SEAVFRCVRL GPVDQAEAEV AYQTAVSIGG HVFKGILHDV GPEALAVAGG  120
SGAGAGEYQF RLTGDGSSPS TAAAGEAGSG SGNIIVSSAG GMDPYPTPGP YGAYPAGTPF  180
FHGHPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G24010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-152CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661471.11e-95PREDICTED: protein SHI RELATED SEQUENCE 1
TrEMBLJ3MZH21e-130J3MZH2_ORYBR; Uncharacterized protein
STRINGOB09G24010.11e-131(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-17Lateral root primordium (LRP) protein-related