PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G26820.1
Common NameLOC102717740
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 159aa    MW: 17492.5 Da    PI: 4.5643
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G26820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB52.31.4e-1626121695
         NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                   ++lP a v r++k  l + a       + +da     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ ++
  OB09G26820.1  26 EELPKAIVRRLVKDKLTQVAAggaeviVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNKNA 121
                   67999*******9988764432222337899*************************************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.6E-3223155IPR009072Histone-fold
PfamPF008087.6E-112797IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.93E-2628154IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAGETGSQPP EGAKPVLASM AEAEVEELPK AIVRRLVKDK LTQVAAGGAE VIVNRDAMAA  60
FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFPEFVEPLN TSLQEFRNKN  120
AARRSETTQK KAEKRRKIDK DSVPQEQNDA ADDGNADED
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G26820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426341e-173AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661566.11e-112PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLJ3N0A31e-111J3N0A3_ORYBR; Uncharacterized protein
STRINGOB09G26820.11e-112(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-36nuclear factor Y, subunit B11