PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G27120.1

Common Name

LOC102720827

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 131aa MW: 14889.2 Da PI: 7.8378

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G27120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.5	9.3e-20	12	63	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd s + r++lg+f+taeeAa+a+++ + +++g+ OB09G27120.1 12 KYRGVRRRP-WGKFAAEIRDSSR---HgVRVWLGTFDTAEEAARAYDRSAYSMRGA 63 8******.******432...25***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.92	12	70	IPR001471	AP2/ERF domain
SMART	SM00380	5.2E-33	12	76	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-14	12	62	IPR001471	AP2/ERF domain
CDD	cd00018	8.52E-29	12	72	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.6E-31	12	71	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-23	12	71	IPR016177	DNA-binding domain
PRINTS	PR00367	5.3E-12	13	24	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-12	36	52	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0010186	Biological Process	positive regulation of cellular defense response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0090332	Biological Process	stomatal closure
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MDRSQEGELV GKYRGVRRRP WGKFAAEIRD SSRHGVRVWL GTFDTAEEAA RAYDRSAYSM 60 RGANAVLNFP ADAHLYARQQ QHHNNNQNNN ASSSSSSANS TTRPPPIEFE YLDDQVLQEM 120 LRDDTTTNNN K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-34	11	131	13	129	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00029	PBM	Transfer from AT5G43410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G27120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006162	1e-92	AP006162.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1331F11.
GenBank	AP014965	1e-92	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-92	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661577.1	2e-94	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LSX0	3e-34	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	J3N0D3	4e-93	J3N0D3_ORYBR; Uncharacterized protein
STRING	OB09G27120.1	6e-94	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	6e-35	ERF family protein

Link Out ? help Back to Top
Entrez Gene	102720827

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]