PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G12330.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 205aa    MW: 21524.8 Da    PI: 11.5689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G12330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-063153123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cgk+F+++  +  H r H
  OB10G12330.1 31 FPCKVCGKRFPSQQAMAGHCRAH 53
                  89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-52955No hitNo description
PfamPF139121.1E-73153IPR007087Zinc finger, C2H2
SMARTSM003550.00233153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-43154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1153158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTTHRPAAGR GGGGARKPPP PPSTKRRSSS FPCKVCGKRF PSQQAMAGHC RAHTRASAGA  60
PTRTAAEARQ LLLPSSPLPL PAVVTVQLAL LWPLTSSVQY CLPPPPSPAA AQIGCRWLPG  120
AFLLRTTRGL LSPCSVHVGD ACSTTTSQPA SAMVDAAPLQ PGSGGHGGEH GRERKRVALM  180
DGGDRGRKKG KERMDGLDLE LRLHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G12330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3N1351e-142J3N135_ORYBR; Uncharacterized protein
STRINGOB10G12330.11e-143(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1762566