PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G13050.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 124aa    MW: 13165.8 Da    PI: 4.5839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G13050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000232183955
                  TCHHHHHHHHHHHHHHH CS
           HLH 39 sKaeiLekAveYIksLq 55
                  +Ka+i + ++eYI+ Lq
  OB10G13050.1  2 DKASIIKDTIEYIQRLQ 18
                  8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-7134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-5133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDKASIIKDT IEYIQRLQAE EHQMVREVAA LESAATATAN APAANPLGIG GGGAEEYEYG  60
GYDALEQRNK KVQRALSVSS INDAVLTAAA DASPSPPPPV EIQELRVSKV RDKVLVTSVM  120
DSGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G13050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0407444e-37AB040744.1 Oryza sativa RERJ1 mRNA for Transcription Factor, complete cds.
GenBankAK2422104e-37AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
GenBankAL6629994e-37AL662999.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence.
GenBankAP0149604e-37AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.12e-23transcription factor bHLH35
TrEMBLJ3N1A72e-83J3N1A7_ORYBR; Uncharacterized protein
STRINGOB10G13050.13e-84(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133