PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G14680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 287aa    MW: 31443 Da    PI: 10.5478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G14680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.82.5e-091940223
                  --SS-EEEEEEE--TT-SS-EE CS
          WRKY  2 dDgynWrKYGqKevkgsefprs 23
                   Dg+ WrKYG K++k+s+fpr 
  OB10G14680.1 19 TDGHLWRKYGEKKIKNSPFPRT 40
                  7********************6 PP
2WRKY28.43.4e-09991451759
                   T-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
          WRKY  17 gsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                    s  +r YYrC+++   +C ++k v++++  dp +  +tY  +H+++
  OB10G14680.1  99 VSWLTRLYYRCSYRddrNCVATKVVQQENdADPPLYRVTYIHHHTCS 145
                   56678********99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-71440IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-201738IPR003657WRKY domain
SMARTSM007743.4E-2518146IPR003657WRKY domain
PROSITE profilePS5081110.3261956IPR003657WRKY domain
PfamPF031062.0E-62041IPR003657WRKY domain
SuperFamilySSF1182904.45E-10100147IPR003657WRKY domain
PfamPF031061.7E-11103144IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-20104147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMLQEGHPTC VNLTPIPHTD GHLWRKYGEK KIKNSPFPRT LTHAKRVCIS GSSRRKTSVE  60
YQLEMGDGTI TKPIIMALVL HIRLIIRRVV ILFHLPLKVS WLTRLYYRCS YRDDRNCVAT  120
KVVQQENDAD PPLYRVTYIH HHTCSPPPPA PPPGDVVFAD PPWPGKADQP VFFRFSPTGA  180
DPPSSPAHHQ QWQHAAAAGG APGPSAVATR SSGGGGPGAA PRDGRRREVA GGHPLRPAAH  240
AADVDVPRRR RWAQTDEVVG ATAVGDDGRR VGHVLGVRFG LVAIRFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G14680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997744e-45AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149664e-45AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126184e-45CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3N1S00.0J3N1S0_ORYBR; Uncharacterized protein
STRINGOB10G14680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.17e-11ABA overly sensitive mutant 3