PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G14840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 170aa    MW: 19550.2 Da    PI: 10.0331
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G14840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.32.3e-12111169457
                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +t+++eq+ +Le+ F++   +  ++e  ++ k l     + +++V++WFqN+R + ++
  OB10G14840.1 111 WWTPKPEQILILESIFNSsMVNTPKDETVHIRKLLklfsAVGDANVFYWFQNHRSRSRR 169
                   59***************8888888888899999998888899**************997 PP
2Wus_type_Homeobox87.31.6e-28109170364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        r+ WtP+peQi iLe++++s +++ +k+e+ +i++ L+ + +++d+NVfyWFQN+++R+r++
       OB10G14840.1 109 RSWWTPKPEQILILESIFNSSMVNTPKDETVHIRKLLKLFSAVGDANVFYWFQNHRSRSRRR 170
                        678*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-9104170IPR009057Homeodomain-like
CDDcd000862.89E-5109170No hitNo description
PfamPF000465.3E-10110169IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-5115170IPR009057Homeodomain-like
PROSITE profilePS500718.892117170IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAINRDNCVS QLAVCTGSVP DELSSHPIAS LQQKYSSIFL TFGLYCCNTI NSFNSINFCG  60
PRRRLDARRE RVGGLFARRE LRVHREWDGD DGGHSPNRHA TVMVGEPVRS WWTPKPEQIL  120
ILESIFNSSM VNTPKDETVH IRKLLKLFSA VGDANVFYWF QNHRSRSRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G14840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635032e-79AK063503.1 Oryza sativa Japonica Group cDNA clone:001-116-E11, full insert sequence.
GenBankAK0732322e-79AK073232.1 Oryza sativa Japonica Group cDNA clone:J033021B15, full insert sequence.
GenBankAP0051672e-79AP005167.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17.
GenBankAP0149632e-79AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-79CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696954.18e-79PREDICTED: LOW QUALITY PROTEIN: WUSCHEL-related homeobox 11-like
TrEMBLJ3N1T61e-124J3N1T6_ORYBR; Uncharacterized protein
STRINGOB10G14840.11e-125(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-29WUSCHEL related homeobox 11